I finally had my ideal world and I had my setup for a giant water storage with a pump. I had the power source, the output pipes connected and a source to take in the water. It would pump two or three water sources then stop unannounced. Whenever I destroyed it and built another it would do the same thing. However, another pump I made in a separate area worked just fine as well as several air pumps in that same close by area (within 5 blocks). I hope I am bringing up a new bug because I tried to find the pump bug beforehand and it didn't show up.