I had the same problem (AP-420700-D).
I think I found a solution. Woo
For the Players:
I made a small mod to fix the bug until the devs fix it.
For the Devs:
I think the end of line 57 in BeanPlantConfig.cs (extracted with dotPeak):
GameObject registerSeedForPlant = EntityTemplates.CreateAndRegisterSeedForPlant(plant, SeedProducer.ProductionType.Harvest, "BeanPlantSeed", name2, desc2, anim2, additionalTags: additionalTags, replantGroundTag: replantGroundTag, sortOrder: 4, domesticatedDescription: domesticateddesc, collisionShape: EntityTemplates.CollisionShape.RECTANGLE, width: 0.6f, height: 0.3f);
Should be "height: 0.3f, ignoreDefaultSeedTag: true);".